Chapter 7 Remarks

Remarks on: Randy Moore et al. 1995. Botany. Wm. C. Brown Publishers. Dubuque, IA.

Photosynthesis

Here we are starting a chapter that is nothing but plants...this chapter covers that pathway distinctly plant-related. No animals carry out this process (yes, yes, there are zooxanthellae in corals that do photosynthesis, but zooxanthellae are "plants").

Your chapter starts with a wonderful historical account of the study of photosynthesis. This is good reading because it shows you how scientists think, and how slowly (sometimes) ideas develop. It also clearly shows how induction works; note the thinking of Van Niel in comparing H2S and H2O. Photosynthesis was studied scientifically in the 1600s, yet we still have not got all the steps completely understood. In fact most of it was a complete mystery until the 1950s (the ancient era when I was born).

Light

I am sure this is review from your chemistry and physics courses. I would just mention that the visible spectrum is important because its lower limits (400 nm) are not such high energy that cell components are damaged, and its upper limits (700 nm) are not such low energy that cells can still harvest it for work.

It is also worthy to note, that bee vision extends from near UV (340 nm = beyond our vision) to orange (600 nm) but excludes red. Plants respond physiologically to wavelengths of light including blue (450 nm) up to far-red (750 nm = beyond our vision).

Light Reactions

You should focus some time toward understanding how pigments absorb light. You should notice the use of a magnesium ion in chlorophyll as a "holder"/donor of electrons within a resonating double-bond system similar to a heme (Fig 7.5). The phytol chain holds the chlorophyll in a membrane (much like ubiquinone). The chlorophyll is associated with membrane proteins in the thylakoid (grana stack) membranes. The protein/chlorophyll complex is associated with other pigments to harvest wavelengths that chlorophyll itself cannot use. Chlorophyll absorbs blue and red (Fig 7.6). Don't ask me why the chlorophyll b line isn't blue-green and why the chlorophyll a line isn't yellow-green in this figure...those would have been my color choices!

Thus, while chlorophyll clearly reflects and cannot use green light (Fig 7.7), plants can use some green light to do photosynthesis (Fig 7.8). Carotenoid and other antenna pigments (pg 140-142) absorb these wavelengths and pass the energy to chlorophyll. The diagram 7.14 (page 144) shows how this energy transfer is an energetically down-hill process (2nd Law of Thermodynamics). The excess energy is lost as heat. Since antenna pigments pass energetically down-hill, then it is no surprise that they absorb at shorter wavelengths (higher energy) than the reaction center pigments. It is no surprise that the reaction center pigments absorb optimally at 680 and 700 nm respectively!

Please note the error in Figure 7.14. One of the transfers shown is uphill! This cannot occur without absorption of additional light. That is not shown...therefore the diagram violates the second law of thermodynamics. I think the lack of yellow shading on that circle is evidence of an artist's error in adding arrows.

The electron excited by light or light energy in the reaction center pigment is transferred down an electron transport system (Fig 7.16) Does this look vaguely like mitochondrial electron transport? It is very similar...including the coupled ATP synthesis. We call this photophosphorylation (vis a vis oxidative phosphorylation) but it is very similar. The critical difference is that the energy comes directly from light, rather than a molecule such as NADH + H+. In fact, notice that NADPH (a compound similar to NADH) is generated as the ultimate electron receptor.

The ATP and NADPH + H+ are the main products of these light reactions. The electrons lost from the first chlorophyll molecule (P680) are replaced by taking them from H2O. The two H+ are attached to NADP+ and the O is assembled into O2. Thank you plants for the oxygen we breathe!

Since plants might not want a fixed ratio of NADPH + H+ to ATP, plants can also do cyclic flow (Fig 7.18). This allows electrons to cycle through the carriers and make lots of ATP without splitting water or making any NADPH+ H+. The famous Z-scheme is shown in Fig 7.19 A. Cyclic flow is not shown there.

The Light-Independent Reactions

Your book wisely avoids the use of "dark reactions" so common in older books. It uses "Biochemical reactions of photosynthesis" instead. Well, the light reactions are biochemical too, so that doesn't work for me."Light-Independent reactions" is what I will use, but that is also fraught with interpretive difficulties. Let's just say that light does not participate directly in these reactions (light-independent). It is certainly not possible for these reactions to occur in the dark either (not "dark" reactions) as they require the products of the light reactions (ATP and NADPH + H+).

Maybe the best name for these is the Calvin Cycle (in honor of Melvin Calvin who discovered many of the steps in the 1950s--see Fig 7.20 and text). You should study this figure to appreciate the level of biochemistry possible just a few decades ago. The work was considered sufficient to earn Calvin a Nobel prize. Unfortunately after 40 years, study of this biologically most-important pathway has been eclipsed by the pathway of the central dogma (DNA->RNA->protein) of genetics [In fact at ECSU we offer two courses that deal directly in this (DNA->RNA = Biotechnology, RNA->protein = Research Methods)]. We do not offer a course on Photosynthesis, let alone separate courses on the light reactions and light-independent reactions...time passes...foci change.

The Calvin Cycle, like the Krebs Cycle, is a wonderful cyclic set of enzymatic steps. It is the source of 3-carbon sugars for assembling 6-carbon sugars for respiration or polymerization into starch and cellulose, etc. It is also a biosynthetic source for four-, five-, and seven-carbon sugars for nucleic acids and other cell wall monomers. Unfortunately, while the diagram (7.21) shows the intermediates, it does not show any possible exit of these intermediates for other uses by the cell. Indeed this happens, but this is "glossed over" by the book. Your book does not name the enzymes in the cycle, unlike its more thorough coverage of glycolysis...more's the pity. Considering the thorough coverage of the light reactions, this is an area of the book needing more balance.

Photorespiration

The coverage of photorespiration is nice, if brief and non-specific. Basically RUBISCO, the carbon fixation enzyme at the beginning of the Calvin cycle, has an active site that can be occupied by carbon dioxide (O=C=O) or oxygen (O=O). While one might expect oxygen to perhaps be a competitive inhibitor in carbon fixation, the situation is actually much worse. The RUBP carbon skeleton is usually released as carbon dioxide with no generation of ATP. The details of that are left out. I guess it is deemed sufficient to know that if oxygen is present in any abundance, then RUBP is combined with oxygen to release carbon dioxide, but without ATP synthesis. That sounds like a respiration event all right, but only a few of the steps occur in mitochondria, and the lack of ATP synthesis makes it a very different process from mitochondrial respiration. That photorespiration removes the critical RUBP needed for the Calvin cycle makes it less than advantageous. Obviously the presence of inefficiencies provides natural selection forces a way to drive evolution of more-efficient solutions...

C4 Photosynthesis

There are probably many specifically-different solutions that have evolved to deal with the photorespiration "problem." We certainly have not studied enough species to know how many. Interestingly, so far as is known, an altered RUBISCO protein that cannot bind oxygen has not evolved. Why millions of years of competitive photosynthesis have not resulted in that solution, is an interesting unanswered question.

What has evolved is a carbon-dioxide pump, to "swamp out" any oxygen and thereby strongly inhibit photorespiration. This pump attaches carbon dioxide to phosphoenolpyruvate (remember this 3-carbon acid from glycolysis?) to form a 4-carbon acid. That is why these reactions are called a C4 pathway. The enzyme, PEPCO, does not have the "oxygen problem." Exactly which 4-carbon product is made and how it is processed varies among plants that have C4 photosynthesis.

The C-4 pathways studied to date can be divided into two separate types: the C-4 and CAM pathways.

C4 Photosynthesis

One of the two major C-4 solutions to the "oxygen problem" operates in daylight. The carbon dioxide is trapped in the 4-carbon intermediate in daytime, the 4-C compound is processed immediately to release the carbon dioxide (at high concentration) in the chloroplasts that will do the Calvin Cycle. This way, the ratio of CO2 to O2 is very high and photorespiration is minimized. This may involve two separate cells (Fig 7.25) such as in plants with Kranz anatomy. Sunflowers and other dicot species may lack such anatomy, but nevertheless accomplish this pathway. Since this "solution" has evolved in many different plant groups, it is apparently an evolutionarily "obvious" solution.

CAM Photosynthesis

This solution separates the C-4 pathway from the C-3 pathway in terms of time (rather than by space [I consider your book in error on this point on page 158--PEPCO and RUBISCO are in the same organelle!]). In CAM plants, the guard cells are open only at night for gas exchange. The PEPCO C-4 reactions trap CO2 at night (Fig 7.27) and the 4-carbon acids are accumulated in the vacuole (to keep the cytoplasm and chloroplast stroma in a homeostatic pH). The ATP for this processing is generated by respiration in the dark.

In the daytime, the guard cells collapse so the stomata are closed to gas exchange. The 4-carbon acid is released from the vacuole and the CO2 is cleaved off to supply RUBISCO with a high concentration of CO2 relative to O2. The Light Reactions and Calvin Cycle then operate in the daylight to refix that CO2 into sugars to drive the night respiration...and so on.

Of these two solutions, the regular C-4 plants are very efficient because of their simultaneous operation of the C-4 and Calvin Cycle. CAM plants are not as efficient because of the constraints caused by their time-based separation of C-4 and Calvin cycle paths. Of course, an organism evolving by selection in a desert environment has very limited options. The harshness of the environment may compromise growth rate in favor of a kind of photosynthesis that can conserve water. The CAM solution certainly does that magnificently, explaining why it is found in most desert species, if not in an obligate way, then in a facultative way. You should read carefully the section on why C-4 plants don't dominate the planet.

Control Points in Photosynthesis

Your book reminds you that light, CO2 concentration, and water availability are important factors. The idea of compensation points for these factors is a critical and practical consideration. Keeping our plants in environments in which these factors are provided at rates above the compensation points will help optimize the growth of plants for our use. Of course, fertilizing our atmosphere with CO2 to reduce photorespiration in our plants might have other undesirable consequences...but maybe we are already doing this? Maybe we can think of plants as helping to reduce the greenhouse effect we have created.

Notice how the author (page 160) reconnected this chapter to our first lecture. Learning is to see the web-work of our real world, rather than just the linear pathways we show you in text books and lectures!


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