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- ASC Analytic Surface Calculation of Proteins
- Atlas of Side-Chain and Main-Chain Hydrogen Bonding
A graphical summary of hydrogen bonding in a dataset of high-resolution protein structures. It shows the distributions of the frequencies and geometries of hydrogen bonds formed by main-chain and side-chain donors and acceptors.
- CATH Classification of Protein Domains
CATHServer allows you to scan a structure against the CATH database to identify related structures. CATH is a domain classification. Simply enter your EMail address and submit your coordinate file in PDB format.
- CE Combinatorial Extension
Aligns proteins 3-dimensionally. Combinatorial Extension determines an optimal alignment between aligned fragment pairs (AFPs). AFPs are determined from local geometry averaged over 8 C alpha positions. Heuristics are used to prevent a combinatorial explosion.Final alignments are by dynamic programming.
- MOOSE Macromolecular Structure Query
Moose queries the native and derived features of macromolecular structure from the Protein Data Bank (PDB)
- MolMol MolMol Molecular Modeling Software
MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. The program runs on UNIX and Windows NT/95 and is freely available
- Oligomer melting point and concentration calculation program (Windows)
Program may be downloaded
- PredictGenes Predict and verify gene structure by alignment.
- Predicting RNA Secondary Structure
- BCM Search Launcher Protein Secondary Structure Prediction
- LIBRA I Protein Structure Prediction by Threading
LIBRA is the name of a computer application for analyzing protein structures and sequences. The basic methodology used is Threading, which means that LIBRA evaluates the compatibility of a protein structure and a sequence. LIBRA I is the abbreviation for LIght Balance for Remote Analogous proteins, ver. I. This page offers an interface to access LIBRA.
- Structure and Modelling Group, University College London
© 2000 by Kurt Stüber