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• Multiple Alignment (5 links)

• ALIGN Align two sequences at IGH Montpellier, France This is a GENESTREAM server.
• AMAS Analyse Multiply Aligned Sequences
• AllAll Compare several peptide sequences simulaneously Compares several user given sequences at the CBRG server of ETHZ
• AllAllDB Comparing several peptide sequences to SWISS-PROT
• Dotplot of DNA or RNA This program takes any DNA or RNA sequence as input and does a dotplot graphics of direct repeats.
• Dotter - a dot-matrix program Dotter is a graphical dotplot program for detailed comparison of two sequences. Here, every residue in one sequence is compared to every residue in the other sequence. The first sequence runs along the x-axis and the second sequence along the y-axis. In regions where the two sequences are similar to each other, a row of high scores will run diagonally across the dot matrix.
• Grail input form Prediction of protein coding regions, polyA sites, Pol II promoters, CpG islands etc.
• Large Dot Plots Calculates a dot plot for the comparison of a sequence to itself. Output as Postscript or GIF-File
• PredictGenes Predict and verify gene structure by alignment.
• TIGR The Institute for Genomic Research The Institute for Genomic Research is a not-for-profit research institute with interests in structural, functional, and comparative analysis of genomes and gene products in viruses, eubacteria, pathogenic bacteria, archaea, and eukaryotes (both plant and animal), including humans.