Category	Database (* daily updated)
Nucleic acid sequences	DNA-today*	GenBank-today*	LinkDB*
		EMBL-today*
Protein sequences	Protein-today*	SwissProt-today*
		PIR
		PRF
		PDBSTR-today*
3D structures	PDB-today*
Sequence motifs	EPD
	TRANSFAC
	PROSITE
Enzymes and compounds	LIGAND*
Protein interactions	BRITE
Biochemical pathways	PATHWAY*
Gene catalogs	GENES*	See also KEGG for each catalog
Genetic diseases	OMIM*
Protein mutations	PMD
Amino acid indices	AAindex
Protein/peptide literature	LITDB
Biomedical literature	Medline

[ DB Release Info | DBGET Help | DBGET Home | GenomeNet Home ]

Comparison	Nucleic Acid Sequence Level	Protein Sequence Level
Query	Nucleic Acid Sequence	Protein Sequence	Nucleic Acid Sequence
Program	BLAST
	blastn	blastp,tblastn	blastx,tblastx
Nucleic Acid Sequence Database	GenBank	GenBank	(GenBank)
	dbEST	dbEST	(dbEST)
	GenBank-upd*	GenBank-upd*	(GenBank-upd)*
	EMBL	EMBL	(EMBL)
	EMBL-upd*	EMBL-upd*	(EMBL-upd)*
	EPD
	nr-nt*	nr-nt*	(nr-nt)*
Protein Sequence Database		SwissProt	SwissProt
		SwissProt-upd*	SwissProt-upd*
		PIR	PIR
		PRF	PRF
		nr-aa*	nr-aa*
		GENES	GENES

(Note) tblastx is available only by e-mail.

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Comparison	Nucleic Acid Sequence Level	Protein Sequence Level
Query	Nucleic Acid Sequence	Protein Sequence
Program	FASTA
	fasta		tfasta
Nucleic Acid Sequence Database	(GenBank)		(GenBank)
	(dbEST)		(dbEST)
	(GenBank-upd)*		(GenBank-upd)*
	(EMBL)		(EMBL)
	(EMBL-upd)*		(EMBL-upd)*
	(EPD)
	(nr-nt)*		(nr-nt)*
Protein Sequence Database		SwissProt
		SwissProt-upd*
		PIR
		PRF
		PDBSTR
		nr-aa*
		GENES

(Note) Searching nucleic acid sequence databases is available only by e-mail.

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